Patients | Samples | Number of tested strains | Numbers of amplified DNA fragmentsawith relate to | Â | ||||
---|---|---|---|---|---|---|---|---|
 |  |  | ORFsbon SCCmec elements |  | ORFscon chromosome |  | ORFsdon mobile genetic elements |  |
A | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV1998 | 4 / 4 |
 | Feces | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | SA1774 / SaGlm / SAV1998 | 2 / 2 |
B | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
C | Nasal swab | 4 | mecI / type 2 ccrA /kdpC | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SLTorf182 / PV83orf2 | 4 / 4 |
 | Feces | 4 | mecI / type 2 ccrA /kdpC | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SLTorf182 / PV83orf2 | 4 / 4 |
D | Nasal swab | 4 | mecI / type 2 ccrA /kdpC | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SLTorf182 / PV83orf2 | 4 / 4 |
 | Feces | 4 | mecI / type 2 ccrA /kdpC | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SLTorf182 / PV83orf2 | 4 / 4 |
E | Nasal swab | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | SA1774 / SaGlm / SAV0881 / SA1801 | 2 / 2 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
F | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 4 / 4 |
G | Nasal swab | 3 | IS1272 / type 2 ccr A | 3 / 3 | MW0919 | 3 / 3 | tnp B / SaGlm / SLTorf182 / PV83orf2 | 2 / 3 |
 |  |  |  |  |  | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 1 / 3 | |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SaGlm / SLTorf182 / PV83orf2 | 4 / 4 |
H | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 4 / 4 |
Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 2 / 4 | |
 |  |  |  |  |  |  | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 2 / 4 |
I | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SaGlm / SLTorf182 / PV83orf2 | 4 / 4 |
 | Feces | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | tnp B / SaGlm / SLTorf182 / PV83orf2 | 2 / 2 |
J | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | SA1774 / SaGlm / SAV0881 / SA1801 | 2 / 2 |
K | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 3 / 4 |
 |  |  |  |  |  | tnp B / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 1 / 4 | |
 | Feces | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / SLTorf182 / PV83orf2 | 2 / 2 |
L | Nasal swab | 1 | IS1272 / type 2 ccr A | 1 / 1 | MW0919 | 1 / 1 | tnp B/ SAV1774 / SaGlm / SAV0881 / SAV1801 | 1 / 1 |
 | Feces | 1 | IS1272 / type 2 ccr A | 1 / 1 | MW0919 | 1 / 1 | SAV0886 / SA1774 / SAV0885 / SaGlm / SAV0881 / SAV1801 | 1 / 1 |
M | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 4 / 4 |
 | Feces | 2 | IS1272 / type 2 ccr A | 2 / 2 | MW0919 | 2 / 2 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 2 / 2 |
N | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | tnp B / SAV0850 / SAV0898 / SAV0866 / SAV1974 / SAV0855 / SaGlm / SLTorf175 / PV83orf2 | 4 / 4 |
O | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
P | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
Q | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
R | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SAV0898 / SAV1774 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SAV1998 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SAV0898 / SAV1774 / SAV0855 / SaGlm / SLTorf175 / SAV0913 / SAV1998 | 4 / 4 |
S | Nasal swab | 4 | mecI / type 2 ccrA /kdp C | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1774 / SAV0855 / SaGlm / SLTorf175 / SAV1801 / SAV0913 / SAV1998 / PV83orf2 | 4 / 4 |
 | Feces | 4 | mecI / type 2 ccrA /kdp C | 4 / 4 | SA2259 | 4 / 4 | tnp B / SAV0898 / SAV0866 / SAV1774 / SAV0855 / SaGlm / SLTorf175 / SAV1801 / SAV0913 / SAV1998 / PV83orf2 | 4 / 4 |
T | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
U | Nasal swab | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |
 | Feces | 4 | IS1272 / type 2 ccr A | 4 / 4 | MW0919 | 4 / 4 | SA1774 / SaGlm / SAV0881 / SA1801 | 4 / 4 |