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Table 3 Acquired antimicrobial resistance genes of 38 clinical E. coli isolates

From: Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Isolate AMGa BLb FQAc Macrolide Phenicol Quinolone Sulphonamide Tetracycline Trimethoprim
4 strA strB blaTEM-1B      sul2   dfrA14
5
6
10   blaOXA-1 aac(6’)Ib-cr   catB3    tet(A)  
21 strA strB       sul2 tet(A) dfrA14
22   blaOXA-1 aac(6’)Ib-cr   catB3    tet(A)  
30
44 aac(3)-IId aadA2 blaCTX-M-15 blaTEM-1B   mph(A) catA1 QnrS1 qepA QnrD sul1 tet(A) dfrA12
70 aadA5 blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 tet(A) dfrA17
73 aadA5 blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 tet(A) dfrA17
82 strA strB aadA2 blaTEM-1B   mph(A)    sul2 sul1 tet(B) tet(A) dfrA12
97   blaOXA-1 aac(6’)Ib-cr   catB3    tet(B)  
115 aadA1 aac(3)-IIa strB strA blaCTX-M-15 blaTEM-1B blaOXA-1 aac(6’)Ib-cr   catB3 catA1 QnrB1 sul2   dfrA14
163A
199 aadA1 strB strA aadA5 aadB blaCTX-M-15 blaTEM-1B blaOXA-1 aac(6’)Ib-cr mph(A) catB3 cmlA1   sul1 sul2 tet(A) dfrA17
203 strB strA blaTEM-1C blaOXA-1 aac(6’)Ib-cr   catB3   sul2 tet(A) dfrA14
210 aadA5 aac(3)-IIa strB strA blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 sul2 tet(A) dfrA17
237C aac(3)-Iia aadA5 strA strB blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 sul2 tet(B) dfrA17
244 aac(3)-IIa aadA5 strA strB blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul2 sul1 tet(B) dfrA17
245 strA aac(3)-IIa strB aadA5 blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 sul2 tet(B) dfrA17
247 strA strB aadA5 blaOXA-1 blaCTX-M-15 aac(6’)Ib-cr mph(A) catB3   sul2 sul1 tet(A) dfrA17
298 strB strA blaTEM-1B    catA1   sul2 tet(D) dfrA7
365 aadA5 blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 tet(A) dfrA17
393 aac(3)-Iia aadA5 blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 tet(B) dfrA17
431D erm(B) strA strB       sul2   
521        sul2 sul1   dfrA5
538 aac(3)-Iia aadA5 strA strB blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 sul2 tet(A) tet(B) dfrA17
554 strA strB blaTEM-1B      sul2   dfrA5
567B aadA5    mph(A)    sul1   dfrA17
587 aadA5 blaCTX-M-15   mph(A)    sul1   dfrA17
603 strB aadA5 aac(3)-IId strA blaTEM-1B   mph(A)    sul2 sul1   dfrA17
118A strB strA blaTEM-1B      sul1 sul2   dfrA7
119EC
340B strB strA       sul2 tet(A) dfrA14
598A strB strA blaTEM-1B   mph(A)    sul2 tet(B) dfrA17
598B aac(3)-IIa strB strA blaTEM-1B blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul2 tet(A) dfrA14
71E aadA5 aac(3)-IIa strB strA blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr mph(A) catB3   sul1 sul2 tet(A) dfrA17
77E strA strB blaCTX-M-15 blaOXA-1 aac(6’)Ib-cr   catB3   sul2 tet(B)  
  1. a Aminoglycoside
  2. b Beta-Lactam
  3. c Fluoroquinolones and aminoglycoside