Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Table 4 Agreement between phenotypically tested and whole genome sequence predicted antimicrobial resistance

Antibiotic name	DST^a	WGS^b	Agreement	Kappa	P value
Amoxicillin-Clavulanate	15 (62.5%)	14 (58.3%)	0.875	0.74	0.0001
Ampicillin	16 (66.7%)	14 (58.3%)	0.9167	0.82	0.00
Ceftazidime	13 (54.2%)	13 (54.2%)	0.9167	0.83	0.00
Ceftriaxone	15 (62.5)	13 (54.2%)	0.9167	0.84	0.00
Chloramphenicol	2 (8.3%)	2 (8.3%)	0.8333	−0.09	0.672
Ciprofloxacin	15 (62.5%)	14 (58.3%)	0.875	0.74	0.0001
Gentamycin	7 (29.2%)	7 (29.2%)	0.9167	0.79	0.00
Trimethoprim Sulpha	17 (70.8%)	4 (16.7%)	0.4583	0.15	0.0799

ISSN: 2047-2994