Phenotypic analysis of antibiotic resistance and genotypic study of the vacA, cagA, iceA, oipA and babA genotypes of the Helicobacter pylori strains isolated from raw milk

Ranjbar, Reza; Farsani, Farid Yadollahi; Dehkordi, Farhad Safarpoor

doi:10.1186/s13756-018-0409-y

Antimicrobial Resistance & Infection Control

Table 6 Combined genotyping pattern of H. pylori strains isolated from different types of raw milk samples

From: Phenotypic analysis of antibiotic resistance and genotypic study of the vacA, cagA, iceA, oipA and babA genotypes of the Helicobacter pylori strains isolated from raw milk

Combined genotyping patterns	Distribution^a (%)
s1a/cagA+/iceA1/oipA+/babA2+	13 (19.40)
s1a/cagA+/iceA1/oipA+/babA2-	15 (22.38)
s1a/cagA+/iceA1/oipA−/babA2+	17 (25.37)
s1a/cagA+/iceA1/oipA−/babA2-	19 (28.35)
s1a/cagA+/iceA2/oipA+/babA2+	4 (5.97)
s1a/cagA+/iceA2/oipA+/babA2-	5 (7.46)
s1a/cagA+/iceA2/oipA−/babA2+	6 (8.95)
s1a/cagA+/iceA2/oipA−/babA2-	7 (10.44)
s1a/cagA−/iceA1/oipA+/babA2+	6 (8.95)
s1a/cagA−/iceA1/oipA+/babA2-	8 (11.94)
s1a/cagA−/iceA1/oipA−/babA2+	8 (11.94)
s1a/cagA−/iceA1/oipA−/babA2-	10 (14.92)
s1a/cagA−/iceA2/oipA+/babA2+	2 (2.98)
s1a/cagA−/iceA2/oipA+/babA2-	4 (5.97)
s1a/cagA−/iceA2/oipA−/babA2+	5 (7.46)
s1a/cagA−/iceA2/oipA−/babA2-	5 (7.46)
s1b/cagA+/iceA1/oipA+/babA2+	9 (13.43)
s1b/cagA+/iceA1/oipA+/babA2-	11 (16.41)
s1b/cagA+/iceA1/oipA−/babA2+	12 (17.91)
s1b/cagA+/iceA1/oipA−/babA2-	14 (20.89)
s1b/cagA+/iceA2/oipA+/babA2+	2 (2.98)
s1b/cagA+/iceA2/oipA+/babA2-	3 (4.47)
s1b/cagA+/iceA2/oipA−/babA2+	4 (5.97)
s1b/cagA+/iceA2/oipA−/babA2-	5 (7.46)
s1b/cagA−/iceA1/oipA+/babA2+	1 (1.49)
s1b/cagA−/iceA1/oipA+/babA2-	1 (1.49)
s1b/cagA−/iceA1/oipA−/babA2+	2 (2.98)
s1b/cagA−/iceA1/oipA−/babA2-	2 (2.98)
s1b/cagA−/iceA2/oipA+/babA2+	–
s1b/cagA−/iceA2/oipA+/babA2-	1 (1.49)
s1b/cagA−/iceA2/oipA−/babA2+	2 (2.98)
s1b/cagA−/iceA2/oipA−/babA2-	2 (2.98)
s1c/cagA+/iceA1/oipA+/babA2+	–
s1c/cagA+/iceA1/oipA+/babA2-	–
s1c/cagA+/iceA1/oipA−/babA2+	1 (1.49)
s1c/cagA+/iceA1/oipA−/babA2-	2 (2.98)
s1c/cagA+/iceA2/oipA+/babA2+	–
s1c/cagA+/iceA2/oipA+/babA2-	–
s1c/cagA+/iceA2/oipA−/babA2+	–
s1c/cagA+/iceA2/oipA−/babA2-	1 (1.49)
s1c/cagA−/iceA1/oipA+/babA2+	–
s1c/cagA−/iceA1/oipA+/babA2-	–
s1c/cagA−/iceA1/oipA−/babA2+	–
s1c/cagA−/iceA1/oipA−/babA2-	1 (1.49)
s1c/cagA−/iceA2/oipA+/babA2+	–
s1c/cagA−/iceA2/oipA+/babA2-	–
s1c/cagA−/iceA2/oipA−/babA2+	–
s1c/cagA−/iceA2/oipA−/babA2-	–
s2/cagA+/iceA1/oipA+/babA2+	12 (17.91)
s2/cagA+/iceA1/oipA+/babA2-	13 (19.40)
s2/cagA+/iceA1/oipA−/babA2+	16 (23.88)
s2/cagA+/iceA1/oipA−/babA2-	18 (26.86)
s2/cagA+/iceA2/oipA+/babA2+	3 (4.47)
s2/cagA+/iceA2/oipA+/babA2-	4 (5.97)
s2/cagA+/iceA2/oipA−/babA2+	6 (8.95)
s2/cagA+/iceA2/oipA−/babA2-	6 (8.95)
s2/cagA−/iceA1/oipA+/babA2+	5 (7.46)
s2/cagA−/iceA1/oipA+/babA2-	7 (10.44)
s2/cagA−/iceA1/oipA−/babA2+	9 (13.43)
s2/cagA−/iceA1/oipA−/babA2-	10 (14.92)
s2/cagA−/iceA2/oipA+/babA2+	1 (1.49)
s2/cagA−/iceA2/oipA+/babA2-	3 (4.47)
s2/cagA−/iceA2/oipA−/babA2+	4 (5.97)
s2/cagA−/iceA2/oipA−/babA2-	5 (7.46)
m1a/cagA+/iceA1/oipA+/babA2+	12 (17.91)
m1a/cagA+/iceA1/oipA+/babA2-	14 (20.89)
m1a/cagA+/iceA1/oipA−/babA2+	17 (25.37)
m1a/cagA+/iceA1/oipA−/babA2-	19 (28.35)
m1a/cagA+/iceA2/oipA+/babA2+	4 (5.97)
m1a/cagA+/iceA2/oipA+/babA2-	5 (7.46)
m1a/cagA+/iceA2/oipA−/babA2+	6 (8.95)
m1a/cagA+/iceA2/oipA−/babA2-	6 (8.95)
m1a/cagA−/iceA1/oipA+/babA2+	6 (8.95)
m1a/cagA−/iceA1/oipA+/babA2-	7 (10.44)
m1a/cagA−/iceA1/oipA−/babA2+	8 (11.94)
m1a/cagA−/iceA1/oipA−/babA2-	10 (14.92)
m1a/cagA−/iceA2/oipA+/babA2+	2 (2.98)
m1a/cagA−/iceA2/oipA+/babA2-	3 (4.47)
m1a/cagA−/iceA2/oipA−/babA2+	5 (7.46)
m1a/cagA−/iceA2/oipA−/babA2-	5 (7.46)
m1b/cagA+/iceA1/oipA+/babA2+	8 (11.94)
m1b/cagA+/iceA1/oipA+/babA2-	10 (14.92)
m1b/cagA+/iceA1/oipA−/babA2+	10 (14.92)
m1b/cagA+/iceA1/oipA−/babA2-	13 (19.40)
m1b/cagA+/iceA2/oipA+/babA2+	2 (2.98)
m1b/cagA+/iceA2/oipA+/babA2-	3 (4.47)
m1b/cagA+/iceA2/oipA−/babA2+	4 (5.97)
m1b/cagA+/iceA2/oipA−/babA2-	4 (5.97)
m1b/cagA−/iceA1/oipA+/babA2+	–
m1b/cagA−/iceA1/oipA+/babA2-	1 (1.49)
m1b/cagA−/iceA1/oipA−/babA2+	1 (1.49)
m1b/cagA−/iceA1/oipA−/babA2-	2 (2.98)
s1b/cagA−/iceA2/oipA+/babA2+	–
m1b/cagA−/iceA2/oipA+/babA2-	1 (1.49)
m1b/cagA−/iceA2/oipA−/babA2+	2 (2.98)
m1b/cagA−/iceA2/oipA−/babA2-	2 (2.98)
m2/cagA+/iceA1/oipA+/babA2+	11 (16.41)
m2/cagA+/iceA1/oipA+/babA2-	13 (19.40)
m2/cagA+/iceA1/oipA−/babA2+	15 (22.38)
m2/cagA+/iceA1/oipA−/babA2-	18 (26.86)
m2/cagA+/iceA2/oipA+/babA2+	2 (2.98)
m2/cagA+/iceA2/oipA+/babA2-	4 (5.97)
m2/cagA+/iceA2/oipA−/babA2+	5 (7.46)
m2/cagA+/iceA2/oipA−/babA2-	6 (8.95)
m2/cagA−/iceA1/oipA+/babA2+	3 (4.47)
m2/cagA−/iceA1/oipA+/babA2-	6 (8.95)
m2/cagA−/iceA1/oipA−/babA2+	8 (11.94)
m2/cagA−/iceA1/oipA−/babA2-	10 (14.92)
m2/cagA−/iceA2/oipA+/babA2+	1 (1.49)
m2/cagA−/iceA2/oipA+/babA2-	3 (4.47)
m2/cagA−/iceA2/oipA−/babA2+	3 (4.47)
m2/cagA−/iceA2/oipA−/babA2-	5 (7.46)

^aDistribution was achieved based on the total numbers of 67 H. pylori isolates

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