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Table 1 Overview of recovered metagenomics sequencing results from infants fed EVC001 and controls

From: Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria

Sample ID Library ID in NCBI-SRA Number of QF reads Number of human-filtered reads Mean read length (bp) Number of ARGs Supplementation with B. infantis EVC001
7020 EBGC1A 16,664,380 11,687,241 139.0 24,584 No
7022 EBGC1B 20,036,684 20,035,538 138.5 763 Yes
7006 EBGC1C 24,650,234 24,611,425 142.2 3,349 Yes
7064 EBGC1D 34,512,182 34,457,072 139.7 784 Yes
7042 EBGC1E 32,069,448 31,976,757 139.1 42,000 No
7085 EBGC1F 33,282,134 31,969,821 142.6 1,267 Yes
7071 EBGC1G 41,857,404 41,821,388 141.0 8,887 No
7018 EBGC1H 31,102,278 30,888,873 144.5 1,246 No
7053 EBGC1I 28,101,472 21,320,795 144.6 707 Yes
7046 EBGC1J 23,792,868 23,789,357 139.7 8,548 Yes
7029 EBGC1K 20,659,444 20,605,385 138.6 8,785 No
7040 EBGC1L 45,898,112 42,404,911 140.9 15,167 No
7002 EBGC1M 25,523,774 22,978,525 140.9 738 Yes
7070 EBGC1N 26,869,998 26,864,626 142.3 754 Yes
7055 EBGC1O 32,042,934 31,924,507 139.4 3,197 No
7025 EBGC1P 26,127,274 23,991,184 142.0 1,897 Yes
7014 EBGC1Q 20,842,834 15,924,419 139.0 22,159 No
7052 EBGC1R 20,538,332 20,105,645 138.8 46,173 No
7074 EBGC1S 32,128,230 32,127,264 141.3 6,301 Yes
7028 EBGC1T 29,018,642 28,901,182 141.2 41,122 No
7077 EBGC2A 38,565,654 38,524,801 141.8 1,068 Yes
7023 EBGC2B 29,636,288 28,626,060 138.8 4,104 No
7054 EBGC2C 31,704,534 31,703,776 137.0 9,46 Yes
7072 EBGC2D 28,452,700 28,389,141 143.1 2,473 Yes
7004 EBGC2E 21,966,018 21,892,596 140.9 25,796 No
7019 EBGC2F 22,137,906 21,102,023 137.1 50,744 No
7005 EBGC2G 24,739,036 23,824,316 137.5 9,539 No
7094 EBGC2H 23,002,228 22,456,171 136.4 6,009 Yes
7079 EBGC2I 29,178,840 29,166,934 139.2 55,263 Yes
7012 EBGC2J 24,605,428 24,554,918 139.9 643 Yes
7035 EBGC2K 22,606,816 22,593,152 142.5 3,228 Yes
7091 EBGC2L 19,907,888 19,866,462 140.3 437 Yes
7007 EBGC2M 19,783,706 19,219,848 139.1 373 Yes
7058 EBGC2O 19,895,006 17,875,331 139.8 2,664 No
7001 EBGC2P 19,391,072 19,383,270 138.6 328 Yes
7032 EBGC2Q 23,850,530 23,837,344 139.9 1,588 Yes
7021 EBGC2R 84,352,444 81,636,315 140.0 107,776 No
7075 EBGC2S 26,710,272 26,301,057 139.4 27,284 No
7067 EBGC2T 20,460,098 20,370,155 138.5 27,587 No
7086 EBGC3A 28,888,864 27,268,596 138.4 51,264 No
7084 EBGC3B 22,770,012 22,182,351 138.4 32,418 No
7068 EBGC3C 23,591,120 23,415,803 138.0 644 Yes
7080 EBGC3D 27,030,836 27,029,113 138.3 416 Yes
7149 EBGC3E 23,871,178 23,862,487 136.8 19,932 No
7076 EBGC3F 48,936,120 48,548,332 138.8 9,874 Yes
7146 EBGC3G 25,966,270 25,897,222 141.1 1,259 Yes
7140 EBGC3H 21,180,698 21,179,628 138.7 219 Yes
7056 EBGC3I 31,171,324 17,196,539 137.4 42,179 No
7174 EBGC3J 20,530,156 20,518,654 138.0 22,767 No
7130 EBGC3K 23,730,582 20,700,297 138.2 17,993 No
7136 EBGC3L 34,194,988 34,053,298 137.5 2,495 Yes
7142 EBGC3M 24,750,628 24,354,502 141.0 1,577 No
7087 EBGC3N 25,393,930 24,853,636 136.4 1,056 Yes
7016 EBGC3O 27,796,252 27,574,657 136.9 8,877 No
7122 EBGC3P 26,488,780 26,470,036 138.6 2,181 No
7050 EBGC3Q 29,278,320 29,179,951 137.3 12,681 No
7051 EBGC3R 23,552,354 23,542,902 134.9 2,028 No
7123 EBGC3S 31,897,560 31,584,466 137.3 1,801 Yes
7015 EBGC3T 24,645,758 24,512,684 136.2 1,300 No
7062 EBGC3U 23,476,062 23,422,279 140.8 36,751 No
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