From: Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria
Sample ID | Library ID in NCBI-SRA | Number of QF reads | Number of human-filtered reads | Mean read length (bp) | Number of ARGs | Supplementation with B. infantis EVC001 |
---|---|---|---|---|---|---|
7020 | EBGC1A | 16,664,380 | 11,687,241 | 139.0 | 24,584 | No |
7022 | EBGC1B | 20,036,684 | 20,035,538 | 138.5 | 763 | Yes |
7006 | EBGC1C | 24,650,234 | 24,611,425 | 142.2 | 3,349 | Yes |
7064 | EBGC1D | 34,512,182 | 34,457,072 | 139.7 | 784 | Yes |
7042 | EBGC1E | 32,069,448 | 31,976,757 | 139.1 | 42,000 | No |
7085 | EBGC1F | 33,282,134 | 31,969,821 | 142.6 | 1,267 | Yes |
7071 | EBGC1G | 41,857,404 | 41,821,388 | 141.0 | 8,887 | No |
7018 | EBGC1H | 31,102,278 | 30,888,873 | 144.5 | 1,246 | No |
7053 | EBGC1I | 28,101,472 | 21,320,795 | 144.6 | 707 | Yes |
7046 | EBGC1J | 23,792,868 | 23,789,357 | 139.7 | 8,548 | Yes |
7029 | EBGC1K | 20,659,444 | 20,605,385 | 138.6 | 8,785 | No |
7040 | EBGC1L | 45,898,112 | 42,404,911 | 140.9 | 15,167 | No |
7002 | EBGC1M | 25,523,774 | 22,978,525 | 140.9 | 738 | Yes |
7070 | EBGC1N | 26,869,998 | 26,864,626 | 142.3 | 754 | Yes |
7055 | EBGC1O | 32,042,934 | 31,924,507 | 139.4 | 3,197 | No |
7025 | EBGC1P | 26,127,274 | 23,991,184 | 142.0 | 1,897 | Yes |
7014 | EBGC1Q | 20,842,834 | 15,924,419 | 139.0 | 22,159 | No |
7052 | EBGC1R | 20,538,332 | 20,105,645 | 138.8 | 46,173 | No |
7074 | EBGC1S | 32,128,230 | 32,127,264 | 141.3 | 6,301 | Yes |
7028 | EBGC1T | 29,018,642 | 28,901,182 | 141.2 | 41,122 | No |
7077 | EBGC2A | 38,565,654 | 38,524,801 | 141.8 | 1,068 | Yes |
7023 | EBGC2B | 29,636,288 | 28,626,060 | 138.8 | 4,104 | No |
7054 | EBGC2C | 31,704,534 | 31,703,776 | 137.0 | 9,46 | Yes |
7072 | EBGC2D | 28,452,700 | 28,389,141 | 143.1 | 2,473 | Yes |
7004 | EBGC2E | 21,966,018 | 21,892,596 | 140.9 | 25,796 | No |
7019 | EBGC2F | 22,137,906 | 21,102,023 | 137.1 | 50,744 | No |
7005 | EBGC2G | 24,739,036 | 23,824,316 | 137.5 | 9,539 | No |
7094 | EBGC2H | 23,002,228 | 22,456,171 | 136.4 | 6,009 | Yes |
7079 | EBGC2I | 29,178,840 | 29,166,934 | 139.2 | 55,263 | Yes |
7012 | EBGC2J | 24,605,428 | 24,554,918 | 139.9 | 643 | Yes |
7035 | EBGC2K | 22,606,816 | 22,593,152 | 142.5 | 3,228 | Yes |
7091 | EBGC2L | 19,907,888 | 19,866,462 | 140.3 | 437 | Yes |
7007 | EBGC2M | 19,783,706 | 19,219,848 | 139.1 | 373 | Yes |
7058 | EBGC2O | 19,895,006 | 17,875,331 | 139.8 | 2,664 | No |
7001 | EBGC2P | 19,391,072 | 19,383,270 | 138.6 | 328 | Yes |
7032 | EBGC2Q | 23,850,530 | 23,837,344 | 139.9 | 1,588 | Yes |
7021 | EBGC2R | 84,352,444 | 81,636,315 | 140.0 | 107,776 | No |
7075 | EBGC2S | 26,710,272 | 26,301,057 | 139.4 | 27,284 | No |
7067 | EBGC2T | 20,460,098 | 20,370,155 | 138.5 | 27,587 | No |
7086 | EBGC3A | 28,888,864 | 27,268,596 | 138.4 | 51,264 | No |
7084 | EBGC3B | 22,770,012 | 22,182,351 | 138.4 | 32,418 | No |
7068 | EBGC3C | 23,591,120 | 23,415,803 | 138.0 | 644 | Yes |
7080 | EBGC3D | 27,030,836 | 27,029,113 | 138.3 | 416 | Yes |
7149 | EBGC3E | 23,871,178 | 23,862,487 | 136.8 | 19,932 | No |
7076 | EBGC3F | 48,936,120 | 48,548,332 | 138.8 | 9,874 | Yes |
7146 | EBGC3G | 25,966,270 | 25,897,222 | 141.1 | 1,259 | Yes |
7140 | EBGC3H | 21,180,698 | 21,179,628 | 138.7 | 219 | Yes |
7056 | EBGC3I | 31,171,324 | 17,196,539 | 137.4 | 42,179 | No |
7174 | EBGC3J | 20,530,156 | 20,518,654 | 138.0 | 22,767 | No |
7130 | EBGC3K | 23,730,582 | 20,700,297 | 138.2 | 17,993 | No |
7136 | EBGC3L | 34,194,988 | 34,053,298 | 137.5 | 2,495 | Yes |
7142 | EBGC3M | 24,750,628 | 24,354,502 | 141.0 | 1,577 | No |
7087 | EBGC3N | 25,393,930 | 24,853,636 | 136.4 | 1,056 | Yes |
7016 | EBGC3O | 27,796,252 | 27,574,657 | 136.9 | 8,877 | No |
7122 | EBGC3P | 26,488,780 | 26,470,036 | 138.6 | 2,181 | No |
7050 | EBGC3Q | 29,278,320 | 29,179,951 | 137.3 | 12,681 | No |
7051 | EBGC3R | 23,552,354 | 23,542,902 | 134.9 | 2,028 | No |
7123 | EBGC3S | 31,897,560 | 31,584,466 | 137.3 | 1,801 | Yes |
7015 | EBGC3T | 24,645,758 | 24,512,684 | 136.2 | 1,300 | No |
7062 | EBGC3U | 23,476,062 | 23,422,279 | 140.8 | 36,751 | No |