Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria

Casaburi, Giorgio; Duar, Rebbeca M.; Vance, Daniel P.; Mitchell, Ryan; Contreras, Lindsey; Frese, Steven A.; Smilowitz, Jennifer T.; Underwood, Mark A.

doi:10.1186/s13756-019-0583-6

Antimicrobial Resistance & Infection Control

Table 1 Overview of recovered metagenomics sequencing results from infants fed EVC001 and controls

From: Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria

Sample ID	Library ID in NCBI-SRA	Number of QF reads	Number of human-filtered reads	Mean read length (bp)	Number of ARGs	Supplementation with B. infantis EVC001
7020	EBGC1A	16,664,380	11,687,241	139.0	24,584	No
7022	EBGC1B	20,036,684	20,035,538	138.5	763	Yes
7006	EBGC1C	24,650,234	24,611,425	142.2	3,349	Yes
7064	EBGC1D	34,512,182	34,457,072	139.7	784	Yes
7042	EBGC1E	32,069,448	31,976,757	139.1	42,000	No
7085	EBGC1F	33,282,134	31,969,821	142.6	1,267	Yes
7071	EBGC1G	41,857,404	41,821,388	141.0	8,887	No
7018	EBGC1H	31,102,278	30,888,873	144.5	1,246	No
7053	EBGC1I	28,101,472	21,320,795	144.6	707	Yes
7046	EBGC1J	23,792,868	23,789,357	139.7	8,548	Yes
7029	EBGC1K	20,659,444	20,605,385	138.6	8,785	No
7040	EBGC1L	45,898,112	42,404,911	140.9	15,167	No
7002	EBGC1M	25,523,774	22,978,525	140.9	738	Yes
7070	EBGC1N	26,869,998	26,864,626	142.3	754	Yes
7055	EBGC1O	32,042,934	31,924,507	139.4	3,197	No
7025	EBGC1P	26,127,274	23,991,184	142.0	1,897	Yes
7014	EBGC1Q	20,842,834	15,924,419	139.0	22,159	No
7052	EBGC1R	20,538,332	20,105,645	138.8	46,173	No
7074	EBGC1S	32,128,230	32,127,264	141.3	6,301	Yes
7028	EBGC1T	29,018,642	28,901,182	141.2	41,122	No
7077	EBGC2A	38,565,654	38,524,801	141.8	1,068	Yes
7023	EBGC2B	29,636,288	28,626,060	138.8	4,104	No
7054	EBGC2C	31,704,534	31,703,776	137.0	9,46	Yes
7072	EBGC2D	28,452,700	28,389,141	143.1	2,473	Yes
7004	EBGC2E	21,966,018	21,892,596	140.9	25,796	No
7019	EBGC2F	22,137,906	21,102,023	137.1	50,744	No
7005	EBGC2G	24,739,036	23,824,316	137.5	9,539	No
7094	EBGC2H	23,002,228	22,456,171	136.4	6,009	Yes
7079	EBGC2I	29,178,840	29,166,934	139.2	55,263	Yes
7012	EBGC2J	24,605,428	24,554,918	139.9	643	Yes
7035	EBGC2K	22,606,816	22,593,152	142.5	3,228	Yes
7091	EBGC2L	19,907,888	19,866,462	140.3	437	Yes
7007	EBGC2M	19,783,706	19,219,848	139.1	373	Yes
7058	EBGC2O	19,895,006	17,875,331	139.8	2,664	No
7001	EBGC2P	19,391,072	19,383,270	138.6	328	Yes
7032	EBGC2Q	23,850,530	23,837,344	139.9	1,588	Yes
7021	EBGC2R	84,352,444	81,636,315	140.0	107,776	No
7075	EBGC2S	26,710,272	26,301,057	139.4	27,284	No
7067	EBGC2T	20,460,098	20,370,155	138.5	27,587	No
7086	EBGC3A	28,888,864	27,268,596	138.4	51,264	No
7084	EBGC3B	22,770,012	22,182,351	138.4	32,418	No
7068	EBGC3C	23,591,120	23,415,803	138.0	644	Yes
7080	EBGC3D	27,030,836	27,029,113	138.3	416	Yes
7149	EBGC3E	23,871,178	23,862,487	136.8	19,932	No
7076	EBGC3F	48,936,120	48,548,332	138.8	9,874	Yes
7146	EBGC3G	25,966,270	25,897,222	141.1	1,259	Yes
7140	EBGC3H	21,180,698	21,179,628	138.7	219	Yes
7056	EBGC3I	31,171,324	17,196,539	137.4	42,179	No
7174	EBGC3J	20,530,156	20,518,654	138.0	22,767	No
7130	EBGC3K	23,730,582	20,700,297	138.2	17,993	No
7136	EBGC3L	34,194,988	34,053,298	137.5	2,495	Yes
7142	EBGC3M	24,750,628	24,354,502	141.0	1,577	No
7087	EBGC3N	25,393,930	24,853,636	136.4	1,056	Yes
7016	EBGC3O	27,796,252	27,574,657	136.9	8,877	No
7122	EBGC3P	26,488,780	26,470,036	138.6	2,181	No
7050	EBGC3Q	29,278,320	29,179,951	137.3	12,681	No
7051	EBGC3R	23,552,354	23,542,902	134.9	2,028	No
7123	EBGC3S	31,897,560	31,584,466	137.3	1,801	Yes
7015	EBGC3T	24,645,758	24,512,684	136.2	1,300	No
7062	EBGC3U	23,476,062	23,422,279	140.8	36,751	No

Back to article page

ISSN: 2047-2994

Contact us

General enquiries: journalsubmissions@springernature.com