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Table 1 Streptococcus and Enterococcus reference species used for analyses

From: Development of a reference data set for assigning Streptococcus and Enterococcus species based on next generation sequencing of the 16S–23S rRNA region

Species Strain number in reference collection of microorganisms Species identification based on gene target Lack of reference sequence in GenBank
S. acidominimus DSM20622 16S rRNA sodA, tuf, rpoB
S. adjacens DSM9848 tuf, rpoB sodA
S. anginosus 4188/08b 16S rRNA, sodA, tuf, rpoB
S. australis 2086/09b sodA tuf, rpoB
S. canis S58a sodA, rpoB tuf
S. constellatus 4093/08b tuf, rpoB
S. cremoris DSM20069 16S rRNA, sodA, tuf, rpoB
S. criceti DSM20562 16S rRNA, sodA, tuf, rpoB
S. cristatus 3965/07b 16S rRNA, sodA, tuf, rpoB
S. difficilis ATCC700208 16S rRNA, sodA, tuf, rpoB
S. downei DSM5635 16S rRNA, sodA, tuf, rpoB
S. durans ATCC19432 sodA, tuf, rpoB
S. dysgalactiae S59a 16S rRNA, tuf sodA
S. equi 886/14b 16S rRNA, sodA, tuf, rpoB
S. equinus 9946/11b 16S rRNA sodA, tuf, rpoB
S. gallolyticus S17a 16S rRNA, tuf
S. gordonii 381/08b 16S rRNA, sodA, tuf, rpoB
S. infantarius DSM22957 rpoB
S. infantis 3800/09b 16S rRNA sodA, tuf, rpoB
S. intermedius 1507/09b sodA, tuf, rpoB
S. mitis PL429c tuf, rpoB
S. mutans 593/09b 16S rRNA, sodA, tuf, rpoB
S. oligofermentans LMG 22279 16S rRNA sodA, tuf, rpoB
S. oralis PL430c sodA, tuf, rpoB
S. ovis DSM16829 sodA, rpoB tuf
S. parasanguinis 2605/14b sodA, tuf, rpoB
S. pasteurianus 4035/12b tuf, rpoB sodA
S. pluranimalium DSM15636 16S rRNA, sodA, tuf, rpoB
S. pneumoniae p60a tuf, rpoB
S. porcinus DSM20725 16S rRNA, sodA, tuf, rpoB
S. pseudopneumoniae p25a rpoB tuf
S. pseudoporcinus DSM18513 16S rRNA, rpoB sodA, tuf
S. pyogenes S43a 16S rRNA, tuf, rpoB
S. saccharolyticus ATCC43076 16S rRNA, sodA, tuf, rpoB
S. salivarius 3917/16b sodA, tuf, rpoB
S. sanguinis 4416/10b 16S rRNA, sodA, tuf, rpoB
S. sinensis DSM14990 16S rRNA, sodA, tuf, rpoB
S. sobrinus 864/02b 16S rRNA, sodA, tuf, rpoB
S. suis 174/12b 16S rRNA, sodA, tuf, rpoB
S. tigurinus ATCC15914 sodA, tuf, rpoB
S. uberis DSM20569 sodA, tuf, rpoB
S. urinalis PL432c 16S rRNA, sodA, tuf, rpoB
E. avium E16a sodA, tuf, rpoB
E. casseliflavus E1a sodA, tuf, rpoB
E. cecorum DSM20682 16S rRNA, sodA, tuf, rpoB
E. durans E4a sodA, tuf, rpoB
E. faecium E18a tuf, rpoB sodA
E. faecalis E12a sodA, tuf, rpoB
E. hirae E9a sodA, tuf, rpoB
E. porcinus LMG 12287 16S rRNA, sodA, rpoB tuf
E. raffinosus E11a sodA, tuf, rpoB
  1. aclinical isolate; Pescara, Italy
  2. bclinical isolate; Warsaw, Poland
  3. cclinical isolate; University Medical Center Groningen, The Netherlands