Table 1 Sequences of primers and probes used in this study
Forward | Reverse | Probe | Amplicon size (bp) | Reference | |
|---|---|---|---|---|---|
16 s | GGAGACTGCCAGTGATAAA | GAGGTCGCTTCTCTTTGT | CCTTACGACCAGGGCTACACACGT | 113 | This study |
kpsM | GTTATATGGGACCGTCATATT | GCCACACTCTTTCGTATC | CCCAGAGCTTGCGGATTATCAATC | 125 | This study |
chuA | CGATGGGCGAAATGTATAA | GTTAGTTTCCGGACGTAAG | TCTCGATTGGTCGCTTCTATACCA | 98 | This study |
CTX-M | GAAAGCGAACCGAATCT | GACATCGTCCCATTGAC | ACCTTGTTAACTATAATCCGATTGCGG | 101 | This study |
sat | AGAAATATGGCATCTGTCACC | CAGACGATATAGTCGGTGTTTC | CAGCAACCATTACTCTGGGACAGC | 97 | This study |
usp | TGAGTTCTGGTATGAGGAAGA | CCCGTATGAACACCATACAC | TACTGCCTGCTAGTGCTTTCTGCC | 126 | This study |
soxS | AGGGTTGATTACCAGTATCC | AACATATCGCAACACATCAC | ACAGCGGCAATCAGCGGCGATATA | 70 | This study |
recA | GAGACAATTTGGTACTCCATC | GATATCCAGTGAAAGCGAAC | CGCCTGGGTGAAGACCGTTCCAT | 90 | This study |
traT | AGATTGCAGAGCGTACTAAG | ACACGGGTCTGGTATTTATG | CAACGGATAATGTTGCCGCCCTGC | 127 | This study |
ihfB | GACGGTTGAAGATGCAGTAA | CGGTAGTGCAAAGAGAAACT | AGCATATGGCCTCGACTCTTGCGC | 108 | This study |
hcaT | GGCATTATGGGAGCAACTAC | CTGGCGAGCAGCAATATAAC | ACCACTATCAACCACGGCAACGCC | 114 | This study |