Code | Collection | Specimen | Genetic relatedness |
---|---|---|---|
A | Day 0 | Allograft perfusion fluid | Cluster of identical isolates, 0 alleles of difference. 1 allele of difference to P6 |
P1 | Day +2 | Blood culture, peripheral | |
P2 | Day +2 | Blood culture, central venous line | |
P3 | Day +2 | Swab, intra-abdominal | |
P4 | Day +3 | Swab, intra-abdominal | |
P5 | Day +3 | Swab, intra-abdominal | |
P7 | Day +3 | Swab, gallbladder | |
P8 | Day +3 | Swab, duodenum | |
P9 | Day +3 | Swab, stomach | |
P6 | Day +3 | Swab, subcutaneus tissue | 1 allele of difference to cluster |
R | – | Reference genome, Enterococcus faecium Aus0004 [18] | 288 alleles of difference to cluster |