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Table 4 Primer sequences and expected amplicon sizes of the pathogenic Strains of E. coli (Pathotyping)

From: Antibiogram and beta-lactamase genes among cefotaxime resistant E. coli from wastewater treatment plant

Target strain

Gene Target

Primer Sequence (5′–3′)

Amplicon Size (bp)

EAEC

Eagg

AGA CTC TGG CGA AAG ACT GTA TC

194

ATG GCT GTC TGT AAT AGA TGA GAA C

EPEC

EaeA

CTG AAC GGC GAT TAC GCG AA

917

GAC GAT ACG ATC CAG

ETEC

LT

GGC GAC AGA TTA TAC CGT GC

450

CGG TCT CTA TAT TCC CTG TT

ST

ATTTTTCTTTCTGTATTGTCTT

190

CACCCGGTACAAGCAGGATT

EIEC

shig

CTGGTAGGTATGGTGAGG

320

CCAGGCCAACAATTATTTCC