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Table 3 MLST, serotype, Fim type, and AMR genes of the isolates analysed by whole genome sequences

From: Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology

  E. coli 43E E. coli 73E E. coli 77E E. coli 95E A. baumannii 13C, 41C, 45C, 50E-B, 51E, 52E A. ursingii 56C P. aeruginosa 71E
MLST ST131 ST131 ST131 ST131 ST130   ST235
Serotype O25:H4 O25:H4 O25:H4 O25:H4    
FimH type fimH30 fimH30 fimH30 fimH30    
Beta-lactam blaCTX-M-27 (100%) blaCTX-M-27 (100%) blaCTX-M-27 (100%) blaCTX-M-14 (100%)
blaTEM-1B (100%)
blaADC-166 (97.74%)
blaOXA-430 (99.88%)
blaCARB-2 (100%) blaPDC-35 (100%)
blaOXA-50 (99.87%)
blaIMP-1 (100%)
blaTEM-1B (100%)
Aminoglycoside aph(3″)-Ib (100%)
aph(6)-Id (100%)
aadA5 (100%)
aph(3″)-Ib (100%)
aph(6)-Id (100%)
aph(3″)-Ib (100%)
aph(6)-Id (100%)
aph(3″)-Ib (100%)
aadA5 (100%)
aac(3)-IId (99.88%)
aac(6′)-Ib3 (99.82%)
  aac(6′)-Ib3 (99.82%)
aph(3″)-Ib (99.88%)
aph(3′)-Ia (100%)
aph(6)-Id (100%)
aac(6′)-Iae (100%)
aph(3′)-II (100%)
aadA1 (100%)
Fluoroquinolone     aac(6′)-Ib-cr (99.49%)   aac(6′)-Ib-cr (99.42%)  
Fosfomycin        fosA (100%)
MLS (Macrolide, Lincosamide, Streptogramin B) mdf(A) (97.81%)
mph(A) (100%)
mdf(A) (97.81%) mdf(A) (97.81%)
mph(A) (100%)
mph(A) (100%)
mdf(A) (97.81%)
  mrs(E) (100%)
mph(E) (100%)
 
Phenicol     cmlA1 (99.92%)   floR (98.35%) catB7 (100%)
Rifampicin       ARR-3 (100%)  
Sulfonamide sul2 (100%)
sul1 (100%)
sul2 (100%) sul2 (100%)
sul1 (100%)
sul2 (100%)
sul1 (100%)
  sul2 (100%)
sul1 (100%)
sul1 (100%)
Tetracycline tet(A) (100%) tet(A) (100%) tet(A) (100%)    tet(39) (99.91%)  
Trimethoprim     dfrA17 (100%)   dfrA19 (100%)