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Table 3 MLST, serotype, Fim type, and AMR genes of the isolates analysed by whole genome sequences

From: Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology

 

E. coli 43E

E. coli 73E

E. coli 77E

E. coli 95E

A. baumannii 13C, 41C, 45C, 50E-B, 51E, 52E

A. ursingii 56C

P. aeruginosa 71E

MLST

ST131

ST131

ST131

ST131

ST130

 

ST235

Serotype

O25:H4

O25:H4

O25:H4

O25:H4

   

FimH type

fimH30

fimH30

fimH30

fimH30

   

Beta-lactam

blaCTX-M-27 (100%)

blaCTX-M-27 (100%)

blaCTX-M-27 (100%)

blaCTX-M-14 (100%)

blaTEM-1B (100%)

blaADC-166 (97.74%)

blaOXA-430 (99.88%)

blaCARB-2 (100%)

blaPDC-35 (100%)

blaOXA-50 (99.87%)

blaIMP-1 (100%)

blaTEM-1B (100%)

Aminoglycoside

aph(3″)-Ib (100%)

aph(6)-Id (100%)

aadA5 (100%)

aph(3″)-Ib (100%)

aph(6)-Id (100%)

aph(3″)-Ib (100%)

aph(6)-Id (100%)

aph(3″)-Ib (100%)

aadA5 (100%)

aac(3)-IId (99.88%)

aac(6′)-Ib3 (99.82%)

 

aac(6′)-Ib3 (99.82%)

aph(3″)-Ib (99.88%)

aph(3′)-Ia (100%)

aph(6)-Id (100%)

aac(6′)-Iae (100%)

aph(3′)-II (100%)

aadA1 (100%)

Fluoroquinolone

   

aac(6′)-Ib-cr (99.49%)

 

aac(6′)-Ib-cr (99.42%)

 

Fosfomycin

      

fosA (100%)

MLS (Macrolide, Lincosamide, Streptogramin B)

mdf(A) (97.81%)

mph(A) (100%)

mdf(A) (97.81%)

mdf(A) (97.81%)

mph(A) (100%)

mph(A) (100%)

mdf(A) (97.81%)

 

mrs(E) (100%)

mph(E) (100%)

 

Phenicol

   

cmlA1 (99.92%)

 

floR (98.35%)

catB7 (100%)

Rifampicin

     

ARR-3 (100%)

 

Sulfonamide

sul2 (100%)

sul1 (100%)

sul2 (100%)

sul2 (100%)

sul1 (100%)

sul2 (100%)

sul1 (100%)

 

sul2 (100%)

sul1 (100%)

sul1 (100%)

Tetracycline

tet(A) (100%)

tet(A) (100%)

tet(A) (100%)

  

tet(39) (99.91%)

 

Trimethoprim

   

dfrA17 (100%)

 

dfrA19 (100%)