Fig. 2From: Emergence of nosocomial associated opportunistic pathogens in the gut microbiome after antibiotic treatmentComparison of Mapped Reads before and after assembly. Pre-assembly mapped reads (Grey): percentage of reads that can be mapped to the NCBI nucleotide database. Post-assembly mapped reads (Gold): percentage of read that can either be mapped to the NCBI nucleotide database or be assembled into a gene that can be mapped to the NCBI nucleotide or protein databases. Control, Ampicillin, and Ciprofloxacin cohorts had scaffolds assembled using pair-end reads. Fosfomycin cohort contigs were assembled using single end reads. See Methods for detailsBack to article page