Fig. 2
From: Genomic analysis of Staphylococcus aureus from the West African Dwarf (WAD) goat in Nigeria
A Neighbor-Joining (NJ) tree of selected S. aureus isolates based on up to 1861 genes of the S. aureus core genome (cg)MLST scheme and annotated with Clonal complex (CC), capsule type, and antibiotic and virulence gene carriage. ST, Sequence type; CC, clonal complex; cap, capsule; Antibiotic resistance genes and product (blaZ, β-lactamase; mecA, alternate penicillin-binding 2a; tetK, tetracycline efflux protein variant K). Enterotoxins and toxic shock syndrome genes (sec, enterotoxin C; tst, toxic shock syndrome toxin). Leukocidin and hemolysin genes (lukD, leukocidin D; lukE, leukocidin E; lukF-P83, bovine Panton-Valentine leukocidin subunit F; lukM, leukocidin M). Immune evasion cluster genes (chp, chemotaxis-inhibiting protein; sak, staphylokinase; scn; staphylococcal complement inhibitor) □ negative ■positive