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Table 3 Comparison of novel In1059 with other integrons in the study

From: Characterization of the novel In1059 harbouring VIM gene cassette

Integron In1059 In846 In843 In37 In62 In1021
Pc variant PcH1 PcH1 None None PcH1 PcH1
“-35”: tggaca “-35”: tggaca “-35”: tggaca “-35”: ggacat
“-35”: taaact “-10”: taaact “-10”: ttcgta “-10”: taaact
P2 promoter Absent Absent Absent Absent Absent Absent
PintI1 Yes Yes Yes Yes Yes Yes
“-10”: agtcta “-10”: agtcta “-10”: agggcg “-10”: agtcta “-10”: agtcta “-10”: agtcta
“-35”: cagcaa “-35”: cagcaa “-35”: catcgt “-35”: cagcaa “-35”: cagca “-35”: cagcaa
19 bp ORF11 duplication No No No No No No
intI1 IntI1 R32_H39 IntI1 R32_H39 Remant of intI1 Remant of intI1 IntI1 R32_H39 IntI1 R32_H39
1010 bp-length 1014 bp-length 4 bp-length 720 bp-length 1014 bp-length 1014 bp-length
attI1 63 bp-length 63 bp-length 63 bp-length 63 bp-length 63 bp-length 63 bp-length
Array of gene cassettes GCbla VIM-5 -
GCaacA4’-37-
(tniC-aadA16)-
(qacE 30-aadB)
GCbla VIM-1 -
GCaacA4cr-
(qacE 101-catB3) -
GCarr-3
GCaacA4cr -
GCarr-3 -
GCdfrA27 -
(qacE 101-aadA16Δ::IS26)
GCaacA4cr -
GCbla OXA-1 -
GCcatB3 -
GCarr-3
GCaacA4cr GCaacA4cr -
(qacE 109-arr-3) -
GCdfrA27 -
(qacE 30-aadA16)
attC attCbla VIM-5(L;R)
attC aacA4Δ(LΔ; R);
attC aadA16/aacA4(L;R);
attC aadBΔ(L; Del)
attCbla VIM-1(L;R);
attC aacA4cr(L;R);
attC catB3 (L;R);
attC aacA4(LΔ; R)
attC aacA4cr (L; R);
attC arr-3 (L;R);
attC dfrA27 (L;R);
attC aadA16 (L;R)
attC aacA4cr (L;R);
attCbla OXA-1(L;R);
attC catB3 (L;R);
attC arr-3 (L; R)
attC aacA4cr (L; R) attC aacA4cr (L;R);
attC arr-3 (L; R);
attC dfrA27 (L; R);
attC aadA16(L;R) mutated
 3′-CS qacEΔ1-sul1 qacEΔ1 (partial) qacEΔ1 (partial) qacEΔ1-sul1 qacEΔ1-sul1 IS15-sul1Δ-IS1
  1. Abbreviations: attC (L; R) left- and right-hand parts of attC in gene cassettes, attC (LΔ; R) truncated left- and normal right- hand parts of attC in gene cassettes, attC (L; Del) normal left- and deleted right-hand parts of attC in gene cassettes, suggesting no functional gene cassette, attC (L; R) mutated mutated left- and mutated right-hand parts of attC in gene cassettes, GC abbreviation of gene cassette