Table 1 Presence of virulence genes in neonatal S. aureus isolates compared to reference genomes
genes | neonatal isolates (%) | refseq (%) | genes | neonatal isolates (%) | refseq (%) |
|---|---|---|---|---|---|
sea | 24.0 | 9.4 | cna | 51.0 | 34.6 |
seb | 4.8 | 5.9 | eap-map | 64.4 | 93.7 |
sec | 18.3 | 10.8 | ebp | 95.2 | 95.2 |
sed | 10.6 | 8.8 | fnbpA | 66.3 | 75.2 |
seg | 51.9 | 55.3 | fnbpB | 65.4 | 75.0 |
seh | 5.8 | 1.7 | sdrC | 91.3 | 96.3 |
sei | 55.8 | 55.2 | sdrD | 50.0 | 74.9 |
sej | 10.6 | 11.1 | sdrE | 89.4 | 85.0 |
sek | 3.8 | 19.0 | efb | 77.9 | 94.7 |
sel | 18.3 | 10.8 | icaA | 100.0 | 97.8 |
sem | 55.8 | 55.6 | icaB | 89.4 | 98.5 |
sen | 45.2 | 55.2 | icaC | 99.0 | 97.8 |
seo | 58.7 | 49.1 | icaD | 100.0 | 98.0 |
sep | 4.8 | 19.1 | icaR | 95.2 | 97.7 |
seq | 4.8 | 19.1 | isaA | 100.0 | 98.3 |
ser | 10.6 | 10.9 | isdA | 100.0 | 97.6 |
ses | 0.0 | 0.3 | isdH | 100.0 | 97.5 |
set | 0.0 | 0.3 | sasG | 54.8 | 56.7 |
seu | 51.9 | 54.8 | edn | 1.0 | 1.4 |
sey | 1.0 | 5.8 | etA | 1.0 | 1.0 |
aur | 100.0 | 98.2 | etB | 0.0 | 0.2 |
coa | 70.2 | 83.0 | etD | 1.0 | 0.8 |
geh | 87.5 | 97.5 | hla | 99.0 | 97.1 |
hysA | 98.1 | 96.5 | hlb | 100.0 | 95.1 |
sak | 73.1 | 78.5 | hld | 90.4 | 98.0 |
sspA | 99.0 | 98.1 | hlgA | 96.2 | 97.6 |
sspB | 91.3 | 98.1 | hlgB | 100.0 | 97.8 |
sspC | 100.0 | 98.3 | hlgC | 98.1 | 97.5 |
vWbp | 78.8 | 98.1 | lukD | 49.0 | 66.5 |
adsA | 96.2 | 98.1 | lukE | 49.0 | 65.9 |
chp | 68.3 | 67.2 | lukF | 0.0 | 18.8 |
sbi | 100.0 | 97.7 | lukM | 0.0 | 0.7 |
scn | 98.1 | 98.2 | lukS | 0.0 | 19.0 |
clfA | 98.1 | 97.4 | tsst-1 | 18.3 | 5.8 |
clfB | 100.0 | 97.8 |