Momtaz H, et al. Uropathogenic Escherichia coli in Iran: serogroup distributions, virulence factors and antimicrobial resistance properties. Ann Clin Microbiol Antimicrob. 2013;12(1):8.
Johnson JR. Virulence factors in Escherichia coli urinary tract infection. Clin Microbiol Rev. 1991;4(1):80–128.
Soto S, et al. Prevalence of the set-1B and astA genes encoding enterotoxins in uropathogenic Escherichia coli clinical isolates. Microb Pathog. 2009;47(6):305–7.
Bauer RJ, et al. Molecular epidemiology of 3 putative virulence genes for Escherichia coli urinary tract infection–usp, iha, and iroNE. coli. J Infect Dis. 2002;185(10):1521–4.
Jahandeh N, et al. Uropathogenic Escherichia coli virulence genes: invaluable approaches for designing DNA microarray probes. Central European journal of urology. 2015;68(4):452.
Farshad, S., et al., Microbial susceptibility, virulence factors, and plasmid profiles of uropathogenic Escherichia coli strains isolated from children in Jahrom, Iran. Archives of Iranian Medicine (AIM), 2012. 15(5).
Tajbakhsh E, et al. Prevalence of class 1 and 2 integrons in multi-drug resistant Escherichia coli isolated from aquaculture water in Chaharmahal Va Bakhtiari province, Iran. Ann Clin Microbiol Antimicrob. 2015;14(1):37.
Ejrnaes K, et al. Pulsed-field gel electrophoresis typing of Escherichia coli strains from samples collected before and after Pivmecillinam or placebo treatment of uncomplicated community-acquired urinary tract infection in women. J Clin Microbiol. 2006;44(5):1776–81.
Anderson KL, Whitlock JE, Harwood VJ. Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments. Appl Environ Microbiol. 2005;71(6):3041–8.
Davies J, Davies D. Origins and evolution of antibiotic resistance. Microbiology and Molecular Biology Reviews : MMBR. 2010;74(3):417–33.
Blair JMA, et al. Molecular mechanisms of antibiotic resistance. Nat Rev Microbiol. 2014;13:42.
Ranjbar R, et al. Shiga (Vero)-toxin producing Escherichia coli isolated from the hospital foods; virulence factors, o-serogroups and antimicrobial resistance properties. Antimicrobial Resistance & Infection Control. 2017;6(1):4.
Heidary M, Momtaz H, Madani M. Characterization of Diarrheagenic antimicrobial resistant Escherichia coli isolated from pediatric patients in Tehran. Iran Iranian Red Crescent Medical Journal. 2014;16(4):e12329.
Momtaz H, et al. Serogroups, virulence genes and antibiotic resistance in Shiga toxin-producing Escherichia coli isolated from diarrheic and non-diarrheic pediatric patients in Iran. Gut Pathogens. 2013;5(1):39.
Singh A, et al. Application of molecular techniques to the study of hospital infection. Clin Microbiol Rev. 2006;19(3):512–30.
Rivas, L., et al., Typing and Subtyping Methods for Pathogenic Escherichia coli, in Detection and Typing Strategies for Pathogenic Escherichia coli. 2015, Springer. p. 67–99.
Ranjbar R, et al. Typing methods used in the molecular epidemiology of microbial pathogens: a how-to guide. The new microbiologica. 2014;37(1):1–15.
Ranjbar R, et al. Isolation of clinical strains of Pseudomonas aeruginosa harboring different plasmids. Pakistan journal of biological sciences: PJBS. 2007;10(17):3020–2.
Arjomandzadegan M, et al. Prevalence of mutations at codon 463 of katg gene in MDR and XDR clinical isolates of mycobacterium tuberculosis in Belarus and application of the method in rapid diagnosis. Acta Microbiol Immunol Hung. 2011;58(1):51–63.
Ranjbar R, et al. Increased isolation and characterization of Shigella sonnei obtained from hospitalized children in Tehran, Iran. Journal of health, population, and nutrition. 2008;26(4):426.
Ranjbar R, et al. Characterization of endemic Shigella boydii strains isolated in Iran by serotyping, antimicrobial resistance, plasmid profile, ribotyping and pulsed-field gel electrophoresis. BMC research notes. 2008;1(1):74.
Ranjbar R, Elhaghi P, Shokoohizadeh L. Multilocus Sequence Typing of the Clinical Isolates of Salmonella Enterica Serovar Typhimurium in Tehran Hospitals. Iranian Journal of Medical Sciences. 2017:41(2).
Ranjbar R, Memariani M, Memariani H. Diversity of variable number tandem repeat loci in Shigella species isolated from pediatric patients. International journal of molecular and cellular medicine. 2015;4(3):174.
Ranjbar R, et al. Distribution of virulence genes and genotyping of CTX-M-15-producing Klebsiella pneumoniae isolated from patients with community-acquired urinary tract infection (CA-UTI). Microb Pathog. 2016;100:244–9.
Pourshafie M, et al. Dissemination of a single Vibrio cholerae clone in cholera outbreaks during 2005 in Iran. J Med Microbiol. 2007;56(12):1615–9.
Sadeghifard, N., R. Ranjbar, and J. Zaeimi, Antimicrobial susceptibility, plasmid profiles, and RAPD-PCR typing of Acinetobacter bacteria. 2011.
Ranjbar R, et al. Molecular characterisation of epidemic isolates of Vibrio cholerae O1 recovered from an outbreak occurred in different parts of Iran in 2005. Clinical Microbiology & Infection. 2009;15(4):S371.
Ranjbar R, et al. Genomic fingerprints of Escherichia coli strains isolated from surface water in Alborz province, Iran. BMC research notes. 2017;10(1):295.
Ranjbar R, Ghazi FM. Antibiotic sensitivity patterns and molecular typing of Shigella sonnei strains using ERIC-PCR. Iran J Public Health. 2013;42(10):1151.
Hosseini MJ, Kaffashian AR. An outbreak of shigellosis due to Shigella flexneri serotype 3a in a prison in Iran. Archives of Iranian medicine. 2010;13(5):413.
Khakabimamaghani S, et al. GelClust: a software tool for gel electrophoresis images analysis and dendrogram generation. Comput Methods Prog Biomed. 2013;111(2):512–8.
Pooideh M, et al. Molecular Epidemiology of Mycobacterium tuberculosis Isolates in 100 Patients With Tuberculosis Using Pulsed Field Gel Electrophoresis. Jundishapur journal of microbiology. 2015;8(7).
Ranjbar R, et al. Genetic relatedness among isolates of Shigella sonnei carrying class 2 integrons in Tehran, Iran, 2002–2003. BMC Infect Dis. 2007;7(1):62.
Askarian Nameghi S. Genotyping Escherichia coli isolates by pulsed-field gel electrophoresis. Institutionen för livsvetenskaper. 2007.
Sabat A, et al. Overview of molecular typing methods for outbreak detection and epidemiological surveillance. Euro Surveill. 2013;18(4):20380.
Van Belkum A, et al. European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM). 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect. 2007;13(146):1469–0691.2007.
Performance Standards for Antimicrobial Susceptibility Testing. 27th ed. CLSI supplement M100. Clinical and Laboratory Standards Institute, Wayne, PA, USA, 2017.
Ribot EM, et al. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7, Salmonella, and Shigella for PulseNet. Foodbourne Pathogens & Disease. 2006;3(1):59–67.
Control, C.f.D. and Prevention, Standard operating procedure for PulseNet PFGE of Escherichia coli O157: H7, Escherichia coli non-O157 (STEC), Salmonella serotypes, Shigella sonnei and Shigella flexneri. Centers for Disease Control and Prevention, Atlanta, 2013.
Cao X, et al. Genotypic characteristics of multidrug-resistant Escherichia coli isolates associated with urinary tract infections. APMIS. 2014;122(11):1088–95.
Dong H-J, et al. Prevalence, virulence potential, and pulsed-field gel electrophoresis profiling of Shiga toxin-producing Escherichia coli strains from cattle. Gut pathogens. 2017;9(1):22.
Ejrnæs K. Bacterial characteristics of importance for recurrent urinary tract infections caused by Escherichia coli. Dan Med Bull. 2011;58(4):B4187.
Niranjan V, Malini A. Antimicrobial resistance pattern in Escherichia coli causing urinary tract infection among inpatients. Indian J Med Res. 2014;139(6):945.
Adib N, et al. Antibiotic resistance profile and virulence genes of uropathogenic Escherichia coli isolates in relation to phylogeny. Trop Biomed. 2014;31(1):17–25.
Shakya P, et al. Antibiotic resistance among Escherichia coli isolates from stool samples of children aged 3 to 14 years from Ujjain, India. BMC Infect Dis. 2013;13(1):477.
Villar HE, et al. Frequency and antibiotic susceptibility patterns of urinary pathogens in male outpatients in Argentina. The Journal of Infection in Developing Countries. 2014;8(06):699–704.
Jakovljević E, et al. A one-year prospective study on the antibiotic resistance of E. coli strains isolated in urinary specimens of children hospitalized at the university pediatric medical Center in Novi sad, Serbia. Infection. 2013;41(6):1111–9.
Melo DB, et al. Antimicrobial resistance and genetic diversity of Escherichia coli isolated from humans and foods. Braz J Microbiol. 2015;46(4):1165–70.
Tarchouna M, et al. Distribution of uropathogenic virulence genes in Escherichia coli isolated from patients with urinary tract infection. Int J Infect Dis. 2013;17(6):e450–3.
Jalali HR, et al. Genotyping of virulence factors of Uropathogenic Escherichia coli by PCR. Novelty in Biomedicine. 2015;3(4):177–81.
Wiles TJ, Kulesus RR, Mulvey MA. Origins and virulence mechanisms of uropathogenic Escherichia coli. Exp Mol Pathol. 2008;85(1):11–9.
Usein CR, et al. Prevalence of virulence genes in Escherichia coli strains isolated from Romanian adult urinary tract infection cases. J Cell Mol Med. 2001;5(3):303–10.
Akpaka PE, Jayaratne P. Usefulness of pulsed field gel electrophoresis assay in the molecular epidemiological study of extended spectrum beta lactamase producers. Gel electrophoresis-advanced techniques. 2012:193–202.
Watabe M, et al. Epidemiological study of E. coli O157: H7 isolated in Northern Ireland using pulsed-field gel electrophoresis (PFGE). The Ulster medical journal. 2008;77(3):168.
Maluta RP, et al. Frequencies of virulence genes and pulse field gel electrophoresis fingerprints in Escherichia coli isolates from canine pyometra. Vet J. 2014;202(2):393–5.
Basim E, Basim H. Pulsed-field gel electrophoresis (PFGE) technique and its use in molecular biology. Turk J Biol. 2001;25(4):405–18.
Anvarinejad M, et al. Genotypic analysis of E. coli strains isolated from patients with cystitis and pyelonephritis. Iranian Red Crescent Medical Journal. 2012;14(7):408.
Yamamoto S, et al. Detection of urovirulence factors in Escherichia coli by multiplex polymerase chain reaction. FEMS Immunol Med Microbiol. 1995;12(2):85–90.
Jones TF, et al. Characteristics of clusters of Salmonella and Escherichia coli O157 detected by pulsed-field gel electrophoresis that predict identification of outbreaks. Foodborne Pathog Dis. 2016;13(12):674–8.
Struve C, Krogfelt KA. In vivo detection of Escherichia coli type 1 fimbrial expression and phase variation during experimental urinary tract infection. Microbiology. 1999;145(10):2683–90.