Emergence of high drug resistant bacterial isolates from patients with health care associated infections at Jimma University medical center: a cross sectional study

The emergence and rapid spread of multidrug resistant pathogenic bacteria is becoming a global health challenge [1]. Recent studies showed an increasing rate of bacterial resistance against available antibiotics. The problem is more pronounced in developing countries attributed to limited antibiotic option, irrational drug use, poor drug quality, poor sanitation, malnutrition, poor and inadequate health care systems, and lack of control for antibiotic use and stewardship program [2, 3].

In the past few decades, antimicrobial drugs have saved many lives and reduced the grief of many million people globally [3]. However, the extraordinary benefits of antimicrobials in reducing morbidity and mortality have been challenged by the emergence of drug resistant bacteria. The recent emergence and spread of these resistant bacteria have become a serious public health concern [4]. Especially, the spread of such bacteria in resource limited countries would have devastating consequences considering the health infrastructure, antibiotic options available and over all resource constraints observed in such countries [5].

In recent years, high dissemination of ESBL producing, carbapenem, and methicillin resistant bacteria are observed worldwide [6, 7]. It is described that the problem of ESBL-producing organisms is more intense in developing countries [8]. However, the magnitude of the problem is still probably underestimated due to inadequate or ineffective detection in some clinical settings [3, 7, 9]. ESBLs are a group of plasmid-mediated, diverse, complex and rapidly evolving enzymes which are capable of hydrolyzing penicillin’s, broad-spectrum cephalosporin’s and monobactam’s [10]. Accordingly, ESBL enzyme producing bacteria have a capacity to resist the action of penicillin’s, broad-spectrum cephalosporin’s and monobactam’s [11]. Furthermore, there is an evidence indicating that most of ESBL producing bacteria are also resistant for carbapenem antibiotics [12, 13]. ESBLs production is most commonly seen among Gram negative bacteria including Escherichia coli, Klebsiella pneumoniae, Proteus mirabilis and Pseudomonas aeruginosa [14].

Infections resulting from antibiotic resistant bacteria are more difficult and, in some instances, impossible to treat with current available antibiotics. Such infections lead to higher morbidity and mortality, imposing huge healthcare cost [15, 16]. In recent years, varieties of bacteria are becoming resistant against two or more classes of antibiotics as a result of selective pressure or horizontal gene transfer. For instance, the magnitude of resistance seen among E. coli, S. aureus, Klebsiella species, P. aeruginosa, A. baumannii, and Enterobacter species is more threatening as these bacteria are the commonest etiologies for commonly observed hospital and community acquired infections [17, 18].

In Ethiopia, the patterns of antibiotic resistance among commonly seen bacterial etiologies have been described previously in different settings [19–21]. However, most of these studies did not address the magnitude of ESBL producing and carbapenem resistance patterns comprehensively. It is also known that bacterial antibiotic resistance is a dynamic process. Resistance patterns seen in the past might not be representing the current situation due to the strong correlation between efficiency of antibiotic use and antibiotic resistance. As a result, information about the current antibiotic resistance pattern of bacteria is very vital to understand the dynamic and trend of resistance.

Clinical characteristics of patients with HAIs at Jimma University Medical Center have recently been published. The incidence and overall prevalence of HAIs at the hospital were 28.15 per 1000 patient days and 19.41% respectively [22]. In the current study, we aimed to determine the MDR, XDR, PDR, ESBL mediated and carbapenem resistance patterns of bacteria isolated from patients with HAIs at the hospital.

Institution based cross-sectional study was carried out in all wards of JUMC from May, 2016 to September, 2016. Totally, 1015 patients were admitted, of these 197 patients had sign of healthcare associated infection during the study time and all were taken as study participants. Microbiological investigation was done for 192 participants suspected to have healthcare associated infection; no microbiological test was done for the other five cases due to inability to obtain proper specimen. Different clinical specimens (blood, urine, wound swab, pus, and sputum) were collected aseptically from the patients with signs of healthcare associated infection. Bacterial identification was performed by standard microbiological methods which are adopted from CLSI guideline.

The overall rate of MDR, XDR and PDR bacterial isolates from JUMC were found to be 30.16, 41.27 and 19.0% respectively. Furthermore, the observed MDR rate is significantly associated with prolonged hospital stay and all patients, who died, were infected with MDR bacterial species (even if, it is not statistically significant). On the other hand, the observed XDR and PDR rate at the hospital indicates that the problem of AMR is increasing at an alarming rate and pathogenic bacteria that circulate in JUMC are becoming more resistant to all available antibiotics. The occurrence of PDR pathogenic bacteria would also have huge potential threat and implications for patient care in the hospital and the community at large. As we are living in the era of very connected world, it is highly likely for these PDR bacteria to be disseminated to other parts of Ethiopia and other parts of the world as well.

To the best of our knowledge, there is no previous report from Ethiopia on the rate of XDR and PDR pathogenic bacteria to compare with this result. It is possible to list some reasons which might have contributed for this observed high XDR and PDR rate. The first reason might be associated with lack of AMR surveillance and stewardship program at JUMC and in Ethiopia in general. There is enough evidence that indicates AMR surveillance and stewardship program helps to understand the pattern of resistance and improve the utilization of antibiotics to prevent occurrence of antibiotic resistance.

The second reason might be associated with lack of comprehensive national antibiotic policies and problems in implementations of policies. In Ethiopia, there is no clear antibiotic policy and controlling mechanism about antibiotic usage. It is a common practice in Ethiopia to buy any antibiotic from private drug vendors and pharmacies without any prescription. This might have contributed for emergence and dissemination of antibiotic resistant bacteria at different settings. The third reason might be associated with lack of system to assess the quality and reliability of imported antibiotics in Ethiopia. For instance, one previous study which assessed the quality of anti-tuberculosis drugs in Ethiopia in 2013 has indicated that around 17% of anti TB drugs were fake drugs [24]. It is easy to imagine the role of these fake drugs on anti TB drug resistance. Likewise, though there is no previous research done in Ethiopia to assess the quality of antibiotics dispensed in private and government pharmacies, it is highly likely that some of them might be sub-standard, given that substantial proportion of the antibiotics in private pharmacies are supplied through unknown routes [25, 26].

The emergence of ESBL producing gram negative rods have become a rising concern in the developing world [27]. In this study, phenotypically, the most common ESBL producing microorganisms were E. coli and Klebsiella species which are 51.6% (16/31) and 46.7% (14/30) respectively; which is comparable with the studies done in Nigeria, Nepal and Burma in which ESBL producing Enterobacteriaceae were 44.3, 43.7 and 38.0% respectively [14, 28, 29]. However, the other studies done in India and Nepal showed that 30.18 and 18.4% of Klebsiella pneumoniae produce ESBL respectively which is lower than our report [30, 31]. Even though the prevalence of ESBLs is not well documented, in many parts of the world 10–40% of strains of Escherichia coli and Klebsiella pneumoniae are estimated to produce ESBLs [27]. High proportion of ESBL producing isolates was documented in the current study which might be due to the fact that our study participants were all hospitalized; since hospitalization was identified as the strongest independent risk factor to express ESBL [32].

Regarding to carbapenem resistance, 19 (21.4%), 4 (44.4%) and 2 (100%) of the Enterobacteriaceae, P. aeruginosa and A. buamannii were carbapenem resistant respectively which are found in the priority one list according to WHO classification [33]. In addition to that, 53.8% of the other commonly isolated S. aureus were methicillin resistant which also needs high attention. Therefore, high attention should be given to these pathogens which are considered as priority one and two according to WHO [33]. To compare with other similar studies, the rate of carbapenem resistance among E.coli (16.1%) and Klebsiella species (30%) is consistent with multinational study done in Europe [34]. In contrary, 25% carbapenem resistance rate observed in this study is lower than a report from Brazil which was 100% [35]. This could be explained by the difference in utilization of carbapenem antibiotics to treat different infections in the respective setups [36, 37]. The observed high carbapenem resistance rate can also be due to prescription of antibiotics without the knowledge of their susceptibility pattern, or introduction and dissemination of carbapenem resistant bacteria strains from other areas with high resistance rate might also be possible as JUMC is frequently visited by different European, Chinese and Korean nationalities due to different collaborative researches, training and service activities.

As reported by other studies, meropenem was the most effective antibiotic against most gram-negative rods [38]. To control high rate of antibiotic resistant isolates coordinated and urgent action is needed to prevent the development of drug resistance in the setting. Surveillance on antibiotic resistance will also be most useful to decide the correct empirical treatment and will help to control and prevent infections caused by resistant pathogens. Furthermore, our data suggest that the most effective antibiotics for gram-negative bacilli in vitro are meropenem followed by cefepime and for gram-positive organisms less resistance was observed against gentamycin.

In this study, high antimicrobial resistance rate was demonstrated. The observed high PDR, ESBL and carbapenem resistance rate is worrisome. Coordinated effort is needed from all stakeholders working in health system in Ethiopia to tackle this important public health problem. An immediate action should be taken at the hospital to start antibiotic stewardship program to reduce the observed antibiotic resistance and prevent further complications.